PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28308_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 215aa    MW: 23219.9 Da    PI: 7.0707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28308_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-1276102127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  Neem_28308_f_1  76 PGQPECQFYMKTGDCKFGAVCRFHHPR 102
                     5789*********************96 PP

2zf-CCCH41.42.3e-13122148127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  Neem_28308_f_1 122 PGEPLCIFYSRYGICKFGPSCKFDHPM 148
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-675102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.59675103IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-977102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-679105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-581103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709121149IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7121148IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10123148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4126146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLQHILGMPF FQGQLGSVSS SESLQQTAGN NQIYGASHQS EPTNSGSQGT NSPYHSGSVP  60
AGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCRFHH PRERLIPVPD CVLSPIGLPL  120
RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FTYNLSTSSS ADTPVRRFLG SSSGTGALNL  180
SSEGLVEAGS GKPRRLSLSE TRQMSSGDDN IDTEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386497.11e-130PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_015386496.11e-130PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_015386495.11e-130PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF91e-110ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A067DXP31e-131A0A067DXP3_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4SMD31e-129V4SMD3_9R
TrEMBLV4UQN01e-129V4UQN0_9R
STRINGVIT_04s0023g00370.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-68zinc finger protein 1